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Preheat oven to 350 degrees. Line 9"x13" baking pan with parchment paper (this makes removing the brownies from the pan easier).
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In a medium microwavable glass bowl, heat coconut oil and sugar for 2 minutes and stir to combine. You want to dissolve some of the sugar, but do not want it to bubble.
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Stir in cocoa powder, salt, baking powder, espresso powder, and vanilla. Add eggs, flax seed/water mixture and applesauce, stirring until well combined.
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Add whole grain flour mix, coconut flour and xanthum gum, and stir until well combined.
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Stir in chocolate chips. Let mixture sit for 5 minutes so coconut flour can absorb moisture.
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Spread batter in parchment paper lined baking pan. Bake 30 minutes.
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Let cool before cutting.